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B4
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First
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Round
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Second
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Round
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Fca RH Locus
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Map Pos.
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R.F.
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GB Acc. Number
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LGD clone #
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Mapping Method
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Hsa Chrom.
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Hsa Homolog
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GB4-RH
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G3-RH
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HsaCytogen.
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Forward Primer
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Reverse Primer
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Forward Primer
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Reverse Primer
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IL2RA
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0.0
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0.52
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RH
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10
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IL2RA
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44.88
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10p15-p14
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Lyons et al., 1997
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Lyons et al., 1997
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GTGAGATCTCCTGGGCTTTG
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CTCCCTGTTCCTCCAATGAC
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Fc.26434
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7.5
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0.51
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AW646835
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EST-TFH9
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RH/SCH
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10
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Hs.26434
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45.01
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CTCACGAGGGAGAGTTCTGG
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CAGAAAAGCCTACCATCTCCA
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NMT2
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64.2
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0.47
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AW646836
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EST-TEG9
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RH/SCH
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10
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NMT2
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95.38
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TGCAGCAGCAGCAAAGTCTA
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AGGAGCAGAGTCGCCAAATA
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VIM
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82.6
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0.43
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AZ081262
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RH
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10
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VIM
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104.78
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10p13
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Lyons et al., 1997
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Lyons et al., 1997
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CTGACCGAAGGTTCCGTATC
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CACNB2
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108.3
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0.52
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RH
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10
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CACNB2
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114.89
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868
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10p12
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CTGTTTTGGGTAGCTGCCAC
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CCCTTTGTGTAAGGCAAGACTG
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CCAGAATTGGCCCAGATAAA
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TCAGCCAGAGGTACAAGCAA
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BMI1
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146.5
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0.62
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AZ081263
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RH
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10
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BMI1
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126.92
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1140
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10p13
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CATTGGGCCATAGTTTGTTAATCTCAA
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CCAATATGGCATTGTACAACAAGC
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AGCCATGTCACTGTGAATAACG
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TTTACTTTCCTTTGATCGGTTTTG
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ITGB1
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188.0
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0.63
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U27351
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RH
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10
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ITGB1
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187.85
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1976
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10p11.2
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CCATGCAAATTTCACAGCAC
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CCTGCACATGAGAAAAACCA
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FCA356
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231.1
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0.65
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see microsatellites
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RH/GL/SCH
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see microsatellites
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see microsatellites
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VWF
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241.1
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0.60
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U31613
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RH
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12
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VWF
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36.27
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12p13.3
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Murphy et al., 1999a
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Murphy et al., 1999a
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TNFR
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249.0
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0.61
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U72344
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RH
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12
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TNFR
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34.19-41.4
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12p13.2
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Murphy et al., 1999a
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Murphy et al., 1999a
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GAPD
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261.1
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0.60
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U82186
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RH/SCH
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12
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GAPD
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42.22
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12p13
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Murphy et al., 1999a
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Murphy et al., 1999a
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TPI1
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264.9
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0.63
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U82194
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RH/SCH
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12
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TPI1
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43.69
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12p13
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Murphy et al., 1999a
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Murphy et al., 1999a
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CD4
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270.7
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0.63
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AB00043
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RH
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12
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CD4
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42.9
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483
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AGTAACCCTTCGGTGCAATG
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AGTGTCTTCTGGCTCTGGGA
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Fc.7771
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309.6
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0.76
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AW646837
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EST-TAG3
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RH
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Hs.7771
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45.21-.71
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CAGTGACAGCCTCATCAAGG
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CAAAAACCAGGGGAGAAACA
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LDHB
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412.4
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0.55
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U82187
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RH/SCH
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12
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LDHB
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(59.96-98.69)
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1178
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12p12.2-12.1
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Lyons et al., 1997
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Lyons et al., 1997
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FCA677
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480.7
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0.48
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see microsatellites
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RH/GL/SCH
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see microsatellites
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see microsatellites
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FCA016
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510.9
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0.55
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see microsatellites
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RH/GL/SCH
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see microsatellites
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see microsatellites
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FCA098
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535.4
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0.56
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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PTHLH
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549.5
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0.50
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AF114698
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RH
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12
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PTHLH
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105.22-105.33
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1323
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12p12.1-11.2
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Murphy et al., 1999a
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Murphy et al., 1999a
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FCA683
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584.4
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0.40
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see microsatellites
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RH/GL/SCH
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see microsatellites
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see microsatellites
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COL2A1
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597.3
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0.39
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U85406
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RH
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12
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COL2A1
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211.39
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1803
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12q12-q13.2
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Lyons et al., 1997
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Lyons et al., 1997
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TEGT
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612.7
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0.45
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AW646838
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EST-TDH10/TDH1
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RH
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12
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TEGT
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218.94-222.22
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12q12-q13
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CCTGAGCTGAAAACCAAGGA
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TGAAGCCAAACTCCACCTCT
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SLC11A2
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646.3
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0.42
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AW646839
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EST-TDE9
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RH
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12
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SLC11A2
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225.98-226.08
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1963-67
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12q13
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CTCAGTTGTCACCACTTGGAA
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AAATCCGTCCTTGTTCTCCA
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HOX3A
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677.7
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0.40
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M62698
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RH/SCH
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12
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HOXC1
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241.12 F
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12q12-q13
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Murphy et al., 1999a
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Murphy et al., 1999a
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FCA044
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700.6
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0.34
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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IFNG
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713.4
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0.41
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AF012099
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RH
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12
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IFNG
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288.18 F
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12q14
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Lyons et al., 1997
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Lyons et al., 1997
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FCA051
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723.5
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0.42
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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RPS26
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760.7
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0.37
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AW646840
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EST-TBC7/TBF9
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RH
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12
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RPS26
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247.75
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12q
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CATAGGCTTTGGTGGAGGTC
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TGCCATTCACAGCAAGGTAG
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FCA652
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807.2
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0.30
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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MGF
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810.0
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0.33
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U82188
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RH
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12
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MGF
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346.69
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12q22
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Lyons et al., 1997
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Lyons et al., 1997
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RD114-3B
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818.9
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0.30
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unpublished
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RH/SCH
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GGTATCACCAAATGCAAGAAGC
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TCCATCACACTTTGCCAAA
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FCA210
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824.9
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0.29
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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FCA187
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835.4
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0.26
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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FCA460
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851.0
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0.24
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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FCA232
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865.1
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0.30
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see microsatellites
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RH/GL/SCH
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see microsatellites
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see microsatellites
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FCA520
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869.8
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0.31
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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TST
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879.5
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0.32
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AW646841
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EST-TAC5
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RH
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22
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TST
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115.04
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1106
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ATCTGAACAACGAGGGAAGC
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CCTGGTACTTGAACTTGGAGGT
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PDGFB
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885.2
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0.31
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AF114699
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RH/SCH
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22
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PDGFB
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133.79
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22q12.3-13.1
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Murphy et al., 1999a
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Murphy et al., 1999a
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Fc.40342
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890.9
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0.30
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AW646842
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EST-TAA3
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RH
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22
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Hs.40342
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124.01
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1147
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GTCCAGAGTCCCAAGGTGTG
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CCACCCTCTTCCTACCCTACC
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PAH
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902.8
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0.28
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AF114700
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RH
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12
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PAH
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399.67
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4748
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12q22-24.2
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Lyons et al., 1997
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Lyons et al., 1997
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FCA069
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923.9
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0.33
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see microsatellites
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RH/GL
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see microsatellites
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see microsatellites
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NDUFA6
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947.3
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0.40
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AW646843
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EST-TDC6
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RH
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22
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NDUFA6
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136.07
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21q22
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AGACATCACCGTGAAACAGG
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CTTAATGACCAGAAGATCAACCAC
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KIAA0685
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965.8
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0.37
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AW646844
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EST-TEG11
|
RH
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22
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KIAA0685
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176.43-175.01
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CAGTCTCTGCACCCCCTGT
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TGCAAAATTTGACTGCCTTAAA
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