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Last Update: 2007.10.03 | ||||
Recent Publication (sorted by research topics) Present ~ 2004 | 2003~ 2000 | 1999 ~ 1996 | 1995 ~ 1993 2007 Das S, Hahn Y, Nagata S, Willingham MC, Bera TK, Lee B, Pastan I. NGEP, a prostate-specific plasma membrane protein that promotes the association of LNCaP cells. Cancer Res. 2007 Feb 15;67(4):1594-601. PubMed Abstract. Hahn Y, Jeong S, Lee B. Inactivation of MOXD2 and S100A15A by Exon Deletion During Human Evolution. Mol Biol Evol. 2007. PubMed Abstract Grigoryev DN, Ma SF, Shimoda LA, Johns RA, Lee B, Garcia JG. Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment. Mol. Cell. Probes. 21: 134-9, 2007. PubMed Abstract Goonesekere, N.C.W., and Lee. B.: Context-Specific Amino Acid Substitution Matrices and Their Use in the Detection of Protein Homologs, Proteins. (In Press) Changhoon Kim and Byungkook Lee: Accuracy of structure-based sequence alignment of automatic methods. BMC bioinformatics. (In Press)
2006 Onda M, Nagata S, FitzGerald DJ, Beers R, Fisher RJ, Vincent JJ, Lee B, Nakamura M, Hwang J, Kreitman RJ, Hassan R, Pastan I. Characterization of the B cell epitopes associated with a truncated form of Pseudomonas exotoxin (PE38) used to make immunotoxins for the treatment of cancer patients. J Immunol. 2006 Dec 15;177(12):8822-34. PubMed Abstract. Lee Y, Ise T, Ha D, Saint Fleur A, Hahn Y, Liu XF, Nagata S, Lee B, Bera TK, Pastan I. Evolution and expression of chimeric POTE-actin genes in the human genome. Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17885-90. PubMed Abstract. Gubbels JA, Belisle J, Onda M, Rancourt C, Migneault M, Ho M, Bera TK, Connor J, Sathyanarayana BK, Lee B, Pastan I, Patankar MS. Mesothelin-MUC16 binding is a high affinity, N-glycan dependent interaction that facilitates peritoneal metastasis of ovarian tumors. Mol Cancer. 2006 Oct 26;5(1):50. PubMed Abstract. Sam V, Tai CH, Garnier J, Gibrat JF, Lee B, Munson PJ. ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification. BMC Bioinformatics. 7: 206, 2006. PubMed Abstract. Hahn Y, Lee B. Human-specific nonsense mutations identified by genome sequence comparisons. Hum Genet. 119: 169-78, 2006. PubMed Abstract. Hahn Y, Bera TK, Pastan IH, Lee B. Duplication and extensive remodeling shaped POTE family genes encoding proteins containing ankyrin repeat and coiled coil domains. Gene. 366: 238-45, 2006. PubMed Abstract. Egland KA, Liu XF, Squires S, Nagata S, Man YG, Bera TK, Onda M, Vincent JJ, Strausberg RL, Lee B, Pastan I. High expression of a cytokeratin-associated protein in many cancers. Proc Natl Acad Sci U S A. 103: 5929-34, 2006. PubMed Abstract. Bera TK, Saint Fleur A, Lee Y, Kydd A, Hahn Y, Popescu NC, Zimonjic DB, Lee B, Pastan I. POTE paralogs are induced and differentially expressed in many cancers. Cancer Res. 66: 52-6, 2006. PubMed Abstract. 2005 Bera T, Egland K, Lee B, Pastan I. LaRochelle W, Shimkets R, eds. Identification of novel cancer target antigens utilizing EST and genome sequence databases. In: Cancer Drug Discovery and Development: The Oncogenomics Handbook. Volume . Totowa, NJ: The Humana Press; 2005. p. 31-42 Tai CH, Lee WJ, Vincent JJ, Lee B. Evaluation of domain prediction in CASP6. Proteins. 61 Suppl 7: 183-92, 2005. PubMed Abstract. Appendix and Supplementary Materials Vincent JJ, Tai CH, Sathyanarayana BK, Lee B. Assessment of CASP6 predictions for new and nearly new fold targets. Proteins. 61 Suppl 7: 67-83, 2005. PubMed Abstract. Tress M, Tai CH, Wang G, Ezkurdia I, Lopez G, Valencia A, Lee B, Dunbrack RL Jr. Domain definition and target classification for CASP6. Proteins. 61 Suppl 7: 8-18, 2005. PubMed Abstract. Hahn Y, Lee B. Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences. Bioinformatics. 21 Suppl 1: i186-i194, 2005. PubMed Abstract. Graziano G, Lee B. On the intactness of hydrogen bonds around nonpolar solutes dissolved in water. Journal of Physical Chemistry B. 109: 8103-8107, 2005. 2004 Bera TK, Das S, Maeda H, Beers R, Wolfgang CD, Kumar V, Hahn Y, Lee B, Pastan I.: NGEP, a gene encoding a membrane protein detected only in prostate cancer and normal prostate. . Proc Natl Acad Sci U S A.. 101: 3059-64, 2004. PubMed Abstract. Hahn Y Bera TK Gehlhaus K Kirsch IR Pastan IH Lee B. Finding fusion genes resulting from chromosome rearrangement by analyzing the expressed sequence databases. Proc Natl Acad Sci U S A. 101: 13257-61, 2004. PubMed Abstract. Bera TK, Huynh N, Maeda H, Sathyanarayana BK, Lee B, Pastan I. Five POTE paralogs and their splice variants are expressed in human prostate and encode proteins of different lengths .Gene. 337: 45-53, 2004. PubMed Abstract. Nagata S Numata Y Onda M Ise T Hahn Y Lee B Pastan I. Rapid grouping of monoclonal antibodies based on their topographical epitopes by a label-free competitive immunoassay. J Immunol Methods. 292: 141-55, 2004. PubMed Abstract. Goonesekere NC Lee B. Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function. Nucleic Acids Res. 32: 2838-43, 2004. PubMed Abstract. Sharma S Sathyanarayana BK Bird JG Hoskins JR Lee B Wickner S. Plasmid P1 RepA is homologous to the F plasmid RepE class of initiators. J Biol Chem. 279: 6027-34, 2004. PubMed Abstract. | ||||
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