• Brinkmann, U., Vasmatzis, G., Lee, B., Yerushalmi, N., Essand, M. and I. Pastan: PAGE-1, an X-linked GAGE like gene that is expressed in normal and neoplastic prostate, testis, and uterus., (submitted). Additional information.
• Almog, O., Benhar, I., Vasmatzis, G., Tordova, M., Lee, B., and I. Pastan: The crystal structure of the disulfide-stabilized Fv fragment of anticancer antibody B1: Conformational influence of an engineered disulfide bond., Proteins: Structure, Genetics and Function 31: 128-138, 1998.
• Vasmatzis, G., Essand, M., Brinkmann, U., Lee, B., and I. Pastan: Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis., Proc. Natl. Acad. Sci. USA 95: 300-304, 1998. Additional information.
• Wang, Y., Huq, H.I., de la Cruz, X., and Lee, B.: A new procedure for constructing peptides into a given C-alpha chain. Fold. & Des. 3: 1-10, 1998.
• Lee, B. and Vasmatzis, G.: Stabilization of protein structures. Current Opinion in Biotechnology 8: 423-428, 1997.
• de la Cruz, X., Mahoney, M., and Lee, B.: Discrete representation of the protein C-alpha chain. Fold. & Des. 2: 223-234, 1997.
• Brinkmann, U., Di Carlo, A., Vasmatzis, G., Kurochkina, N., Beers, R., Lee, B., and Pastan, I.: Stabilization of a recombinant Fv fragment by base-loop interconnection and VH-VL permutation. J. Mol. Biol. 268: 107-117, 1997.
• Kocher, J.-P., Prevost, M., Wodak, S. J., and Lee, B.: Properties of the protein matrix revealed by the free energy of cavity formation. Structure 4: 1517-29, 1996.
• Reiter, Y., Brinkmann, U., Lee, B., and Pastan, I.: Engineering antibody Fv fragments for cancer detection and therapy: Disulfide-stabilized Fv fragments. Nature Biotechnology 14: 1239-45, 1996.
• Lee, B., and Graziano, G.: A two-state model of hydrophobic hydration that produces compensating enthalpy and entropy changes. J. Am. Chem. Soc. 118: 5163-5168, 1996.
• de la Cruz, X. and Lee, B.: The structural homology between uteroglobin and the pore-forming domain of colicin A suggests a possible mechanism of action for UG. Protein Science 5: 857-61, 1996.
• Lee, B., Kurochkina, N., and Kang, H. S.: Protein folding by a biased Monte Carlo procedure in the dihedral angle space. FASEB Journal 10: 119-125, 1996.
• Reiter, Y., Brinkmann, U., Jung, S.-H., Pastan, I., and Lee, B.: Disulfide-stabilization of antibody Fv: Computer predictions and experimental evaluation. Protein Eng. 8: 437-42, 1995.
• Lee, B.: New approaches for analyzing solvent reorganization and hydrophobicity. Methods in Enzymology, Vol. 259, Chapter 25, pp. 555-576, 1995.
• Kurochkina, N., and Lee, B.: Hydrophobic potential by pair-wise surface area sum. Protein Eng. 8: 437-442, 1995.
• Reiter, Y., Kurucz, I., Brinkmann, U., Jung, S.-H., Lee, B., Segal, D.M., and Pastan, I.: Construction of a functional disulfide stabilized TCR Fv indicates that antibody and TCR Fv frameworks are very similar in structure. Immunity 2:281-287,1995.
• Benhar, I., Padlan, E.A., Jung, S.-H., Lee, B., and Pastan, I.: Rapid humanization of the Fv of monoclonal antibody B3 by using framework exchange of the recombinant immunotoxin B3(Fv)-PE38. Proc. Natl. Acad. Sci. USA 91: 12051-12055, 1994.
• Kurochkina, N.A., Kang, H.S., and Lee, B.: Experiences with dihedral angle space Monte Carlo search for small protein structures. Statistical Mechanics, Protein Structure, and Protein Substrate Interactions, Doniach, S. ed., Plenum, New York, NY, pp. 147-157, 1994.
• Roscoe, D.M., Jung, S.-H., Benhar, I., Pai, L. Lee, B., and Pastan, I.: Primate antibody response to immunotoxin: serological and computer-aided analysis of epitopes on a truncated form of Pseudomonas exotoxin. Infect. Immun. 62: 5055-5065, 1994.
• Sergeev, Y. and Lee, B.: Alignment of beta-barrels in (a/b)8 proteins using hydrogen-bonding pattern. J. Mol. Biol. 244: 168-182, 1994.
• Kreitman, R.J., Puri, R.K., Leland, P., Lee, B., and Pastan, I.: Site-specific conjugation to interleukin 4 containing mutated cysteine residues produces interleukin 4-toxin conjugates with improved binding and activity. Biochemistry 33: 11637-11644, 1994.
• Madan, B., and Lee, B.: Role of hydrogen bonds in hydrophobicity: the free energy of cavity formation in water models with and without the hydrogen bonds. Biophysical Chem. 51: 279- 289, 1994.
• Lee, B.: Enthalpy-entropy compensation in the thermodynamics of hydrophobicity. Biophysical Chem. 51: 271-278, 1994.
• Lee, B.: Relation between volume correction and the standard state. Biophysical Chem. 51: 263-269, 1994.
• Reiter, Y., Brinkmann, U., Jung, S.-H., Lee, B., Kasprzyk, P.G., King, C.R., and Pastan, I.: Improved binding and anti-tumor activity of a recombinant anti-erbB2 immunotoxin by disulfide-stabilization of the Fv fragment. J. Biol. Chem. 269: 18327-18331, 1994.
• Reiter, Y., Brinkmann, U., Kreitman, R.J., Jung, S.-H., Lee, B., and Pastan, I.: Stabilization of the Fv fragments in recombinant immunotoxins by disulfide bonds engineered into conserved framework regions. Biochemistry 33: 5451-5459, 1994.
• Reiter, Y., Brinkmann, U., Webber, K.O., Jung, S.-H., Lee, B., and Pastan, I.: Engineering disulfide bonds into conserved framework regions of Fv fragments: improved biochemical characteristics of recombinant immunotoxins containing disulfide-stabilized Fv. Protein Engineering 7: 697-704, 1994.
• Jung, S.-H., Pastan, I., and Lee, B.: Design of interchain disulfide bonds in the framework region of the Fv fragment of the monoclonal antibody B3. Proteins: Structure, Genetics and Function 19: 35-47, 1994.
• Brinkmann, U., Reiter, Y., Lee, B., Jung, S.-H., and Pastan, I.: A recombinant immunotoxin containing a disulfide-stabilized Fv fragment (dsFv) and a truncated form of Pseudomonas exotoxin. Proc. Natl. Acad. Sci. USA. 90: 7538-7542, 1993.
• McPhie, P., Parkison, C. Lee, B., and Cheng, S.-Y.: Structure of the hormone binding domain of human b1 thyroid hormone nuclear receptor: Is it an a/b barrel? Biochemistry 32: 7460-7465, 1993.
• Suh, E., Lee, B., Narahari, B., Choudhary, A.N., and Martino, R.: Parallel computation of solvent accessible surface area of protein molecules. Proceeding of the Seventh International Parallel Processing Symposium, pp. 685-689, 1993.
• Brinkmann, U., Lee, B., and Pastan, I.: Cytotoxicity of recombinant immunotoxins containing the VH or VL domain of monoclonal antibody B3 fused to Pseudomonas exotoxin. J. Immunol. 150: 2774-2782, 1993.
• Lee, B.: Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size. Protein Science, 2: 733-738, 1993.
• Juretic, D., Lee, B., Trinajstic, N., and Williams, R.W.: Conformational preference functions for predicting helices in membrane proteins. Biopolymers, 33: 255-273, 1993.
• Kang, H.S., Kurochkina, N.A., and Lee, B.: Estimation and use of protein backbone angle probabilities. J. Mol. Biol. 229: 448-460, 1993.Additional information.
• Pastan, I., Lee, B., Jung, S.-H., and Brinkmann, U.: Recombinant disulfide-stabilized polypeptide fragments having binding specificity. Patent application filed on June 14, 1993. Application serial number: 08/077,252.

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